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Latest publications of CIBIO affiliates (last updated on December 1st, 2018)

Berti A, Caporali R, Montecucco C, Paolazzi G, Monti S (2018) Aging in Primary Systemic Vasculitis: Implications for Diagnosis, Clinical Manifestations, and Management. Drugs Aging, doi:10.1007/s40266-018-0617-4.
http://www.ncbi.nlm.nih.gov/pubmed/30484240

Polanco MJ, Pennuto M (2018) Pituitary adenylyl cyclase activating polypeptide (PACAP) signaling and the cell cycle machinery in neurodegenerative diseases. Curr. Pharm. Des., doi:10.2174/1381612825666181127102311.
http://www.ncbi.nlm.nih.gov/pubmed/30479210

Muglia P, Filosi M, Da Ros L, Kam-Thong T, Nardocci F, Trabetti E, Ratti E, Rizzini P, Zuddas A, Bernardina BD, Domenici EItalian Autism Network,  (2018) The Italian autism network (ITAN): a resource for molecular genetics and biomarker investigations. BMC Psychiatry, 18(1):369, doi:10.1186/s12888-018-1937-y.
http://www.ncbi.nlm.nih.gov/pubmed/30463616

Borrenberghs D, Zurnic I, De Wit F, Acke A, Dirix L, Cereseto A, Debyser Z, Hendrix J (2018) Post-mitotic BET-induced reshaping of integrase quaternary structure supports wild-type MLV integration. Nucleic Acids Res., doi:10.1093/nar/gky1157.
http://www.ncbi.nlm.nih.gov/pubmed/30445610

Raneri M, Pinatel E, Peano C, Rampioni G, Leoni L, Bianconi I, Jousson O, Dalmasio C, Ferrante P, Briani F (2018) Pseudomonas aeruginosa mutants defective in glucose uptake have pleiotropic phenotype and altered virulence in non-mammal infection models. Sci Rep, 8(1):16912, doi:10.1038/s41598-018-35087-y.
http://www.ncbi.nlm.nih.gov/pubmed/30442901

Manara S, Pasolli E, Dolce D, Ravenni N, Campana S, Armanini F, Asnicar F, Mengoni A, Galli L, Montagnani C, Venturini E, Rota-Stabelli O, Grandi G, Taccetti G, Segata N (2018) Whole-genome epidemiology, characterisation, and phylogenetic reconstruction of Staphylococcus aureus strains in a paediatric hospital. Genome Med, 10(1):82, doi:10.1186/s13073-018-0593-7.
http://www.ncbi.nlm.nih.gov/pubmed/30424799

Grandi A, Fantappiè L, Irene C, Valensin S, Tomasi M, Stupia S, Corbellari R, Caproni E, Zanella I, Isaac SJ, Ganfini L, Frattini L, König E, Gagliardi A, Tavarini S, Sammicheli C, Parri M, Grandi G (2018) Vaccination With a FAT1-Derived B Cell Epitope Combined With Tumor-Specific B and T Cell Epitopes Elicits Additive Protection in Cancer Mouse Models. Front Oncol, 8:481, doi:10.3389/fonc.2018.00481.
http://www.ncbi.nlm.nih.gov/pubmed/30416985

Re A, Nardella C, Quattrone A, Lunardi A (2018) Editorial: Precision Medicine in Oncology. Front Oncol, 8:479, doi:10.3389/fonc.2018.00479.
http://www.ncbi.nlm.nih.gov/pubmed/30416984

Maurer SE, Tølbøl Sørensen K, Iqbal Z, Nicholas J, Quirion K, Gioia M, Monnard PA, Hanczyc MM (2018) Vesicle Self-Assembly of Monoalkyl Amphiphiles under the Effects of High Ionic Strength, Extreme pH, and High Temperature Environments. Langmuir, doi:10.1021/acs.langmuir.8b02830.
http://www.ncbi.nlm.nih.gov/pubmed/30407827

Ghensi P, Tonetto G, Soldini C, Bettio E, Mortellaro C, Soldini C (2018) Dental Implants With a Platform-Switched Morse Taper Connection and an Osteo Growth Induction Surface. J Craniofac Surg, doi:10.1097/SCS.0000000000004795.
http://www.ncbi.nlm.nih.gov/pubmed/30394965

Romanel A (2019) Allele-Specific Expression Analysis in Cancer Using Next-Generation Sequencing Data. Methods Mol. Biol., 1878:125-137, doi:10.1007/978-1-4939-8868-6_7.
http://www.ncbi.nlm.nih.gov/pubmed/30378073

Franzosa EA, McIver LJ, Rahnavard G, Thompson LR, Schirmer M, Weingart G, Lipson KS, Knight R, Caporaso JG, Segata N, Huttenhower C (2018) Species-level functional profiling of metagenomes and metatranscriptomes. Nat. Methods, 15(11):962-968, doi:10.1038/s41592-018-0176-y.
http://www.ncbi.nlm.nih.gov/pubmed/30377376

Cesaratto F, Sasset L, Myers MP, Re A, Petris G, Burrone OR (2018) BiP/GRP78 Mediates ERAD Targeting of Proteins Produced by Membrane-Bound Ribosomes Stalled at the STOP-Codon. J. Mol. Biol., doi:10.1016/j.jmb.2018.10.009.
http://www.ncbi.nlm.nih.gov/pubmed/30367842

Lorrai R, Gandolfi F, Boccaccini A, Ruta V, Possenti M, Tramontano A, Costantino P, Lepore R, Vittorioso P (2018) Genome-wide RNA-seq analysis indicates that the DAG1 transcription factor promotes hypocotyl elongation acting on ABA, ethylene and auxin signaling. Sci Rep, 8(1):15895, doi:10.1038/s41598-018-34256-3.
http://www.ncbi.nlm.nih.gov/pubmed/30367178

Roussigné M, Wei L, Tsingos E, Kuchling F, Alkobtawi M, Tsalavouta M, Wittbrodt J, Carl M, Blader P, Wilson SW. (2018) Left/right asymmetric collective migration of parapineal cells is mediated by focal FGF signaling activity in leading cells. Proc Natl Acad Sci U S A, 115(42):E9812-E9821, doi: 10.1073/pnas.1812016115.
https://www.ncbi.nlm.nih.gov/pubmed/30282743

Pollini D, Loffredo R, Cardano M, Conti L, Lattante S, Notarangelo A, Sabatelli M, Provenzani A (2018) Generation and characterization of a human iPSC line from an ALS patient carrying the Q66K-MATR3 mutation. Stem Cell Res, 33:146-150, doi:10.1016/j.scr.2018.10.011.
http://www.ncbi.nlm.nih.gov/pubmed/30366341

Ghensi P, Cucchi A, Bonaccorso A, Ferroni L, Gardin C, Mortellaro C, Zavan B (2018) In Vitro Effect of Bromelain on the Regenerative Properties of Mesenchymal Stem Cells. J Craniofac Surg, doi:10.1097/SCS.0000000000004862.
http://www.ncbi.nlm.nih.gov/pubmed/30358745

Clamer M, Tebaldi T, Lauria F, Bernabò P, Gómez-Biagi RF, Marchioretto M, Kandala DT, Minati L, Perenthaler E, Gubert D, Pasquardini L, Guella G, Groen EJN, Gillingwater TH, Quattrone A, Viero G (2018) Active Ribosome Profiling with RiboLace. Cell Rep, 25(4):1097-1108.e5, doi:10.1016/j.celrep.2018.09.084.
http://www.ncbi.nlm.nih.gov/pubmed/30355487

Gasperini L, Rossi A, Cornella N, Peroni D, Zuccotti P, Potrich V, Quattrone A, Macchi P (2018) The hnRNP raly regulates PRMT1 expression and interacts with the ALS-linked protein FUS: implication for reciprocal cellular localization. Mol. Biol. Cell, doi:10.1091/mbc.E18-02-0108.
http://www.ncbi.nlm.nih.gov/pubmed/30354839

O'Sullivan A, Salcedo J, Rubert J (2018) Correction to: Advanced analytical strategies for measuring free bioactive milk sugars: from composition and concentrations to human metabolic response. Anal Bioanal Chem, 410(30):7997, doi:10.1007/s00216-018-1389-8.
http://www.ncbi.nlm.nih.gov/pubmed/30353219

Mezzavilla M, Notarangelo M, Concas MP, Catamo E, Gasparini P, Grillotti MG, Robino A (2018) Investigation of the link between PROP taste perception and vegetables consumption using FAOSTAT data. Int J Food Sci Nutr, doi:10.1080/09637486.2018.1519527.
http://www.ncbi.nlm.nih.gov/pubmed/30304964

Pacchioni F, Esposito A, Giacobazzi E, Bettua C, Struffi P, Jousson O (2018) Air and waterborne microbiome of a pharmaceutical plant provide insights on spatiotemporal variations and community resilience after disturbance. BMC Microbiol., 18(1):124, doi:10.1186/s12866-018-1267-8.
http://www.ncbi.nlm.nih.gov/pubmed/30285625

Roussigné M, Wei L, Tsingos E, Kuchling F, Alkobtawi M, Tsalavouta M, Wittbrodt J, Carl M, Blader P, Wilson SW (2018) Left/right asymmetric collective migration of parapineal cells is mediated by focal FGF signaling activity in leading cells. Proc. Natl. Acad. Sci. U.S.A., 115(42):E9812-E9821, doi:10.1073/pnas.1812016115.
http://www.ncbi.nlm.nih.gov/pubmed/30282743

Le Gall G, Guttula K, Kellingray L, Tett AJ, Ten Hoopen R, Kemsley KE, Savva GM, Ibrahim A, Narbad A (2018) Metabolite quantification of faecal extracts from colorectal cancer patients and healthy controls. Oncotarget, 9(70):33278-33289, doi:10.18632/oncotarget.26022.
http://www.ncbi.nlm.nih.gov/pubmed/30279959

Firrito C, Bertelli C, Vanzo T, Chande A, Pizzato M (2018) SERINC5 as a New Restriction Factor for Human Immunodeficiency Virus and Murine Leukemia Virus. Annu Rev Virol, 5(1):323-340, doi:10.1146/annurev-virology-092917-043308.
http://www.ncbi.nlm.nih.gov/pubmed/30265629

Nava Rodrigues D, Casiraghi N, Romanel A, Crespo M, Miranda S, Rescigno P, Figueiredo I, Riisnaes R, Carreira S, Sumanasuriya S, Gasperini P, Sharp A, Mateo J, Mackay A, McNair C, Schiewer MJ, Knudsen KE, Boysen G, Demichelis F, de Bono JS (2018) RB1 Heterogeneity in Advanced Metastatic Castration Resistant Prostate Cancer. Clin. Cancer Res., doi:10.1158/1078-0432.CCR-18-2068.
http://www.ncbi.nlm.nih.gov/pubmed/30257982

Poli V, Fagnocchi L, Fasciani A, Cherubini A, Mazzoleni S, Ferrillo S, Miluzio A, Gaudioso G, Vaira V, Turdo A, Gaggianesi M, Chinnici A, Lipari E, Bicciato S, Bosari S, Todaro M, Zippo A (2018) Author Correction: MYC-driven epigenetic reprogramming favors the onset of tumorigenesis by inducing a stem cell-like state. Nat Commun, 9(1):3921, doi:10.1038/s41467-018-06480-y.
http://www.ncbi.nlm.nih.gov/pubmed/30237396

Beltran H, Oromendia C, Danila DC, Montgomery B, Hoimes C, Szmulewitz RZ, Vaishampayan U, Armstrong AJ, Stein M, Pinski J, Mosquera JM, Sailer V, Bareja R, Romanel A, Gumpeni N, Sboner A, Dardenne E, Puca L, Prandi D, Rubin MA, Scher HI, Rickman DS, Demichelis F, Nanus DM, Ballman KV, Tagawa ST (2018) A Phase II Trial of the Aurora Kinase A Inhibitor Alisertib for Patients with Castration-resistant and Neuroendocrine Prostate Cancer: Efficacy and Biomarkers. Clin. Cancer Res., doi:10.1158/1078-0432.CCR-18-1912.
http://www.ncbi.nlm.nih.gov/pubmed/30232224

Vasile F, Della Volpe S, Ambrosio FA, Costa G, Unver MY, Zucal C, Rossi D, Martino E, Provenzani A, Hirsch AKH, Alcaro S, Potenza D, Collina S (2018) Exploration of ligand binding modes towards the identification of compounds targeting HuR: a combined STD-NMR and Molecular Modelling approach. Sci Rep, 8(1):13780, doi:10.1038/s41598-018-32084-z.
http://www.ncbi.nlm.nih.gov/pubmed/30214075

Ciacci N, D'Andrea MM, Marmo P, Demattè E, Amisano F, Di Pilato V, Fraziano M, Lupetti P, Rossolini GM, Thaller MC (2018) Characterization of vB_Kpn_F48, a Newly Discovered Lytic Bacteriophage for Klebsiella pneumoniae of Sequence Type 101. Viruses, 10(9), doi:10.3390/v10090482.
http://www.ncbi.nlm.nih.gov/pubmed/30205588

Zielonka M, Breuer M, Okun JG, Carl M, Hoffmann GF, Kölker S (2018) Pharmacologic rescue of hyperammonemia-induced toxicity in zebrafish by inhibition of ornithine aminotransferase. PLoS ONE, 13(9):e0203707, doi:10.1371/journal.pone.0203707.
http://www.ncbi.nlm.nih.gov/pubmed/30199544

Montagna C, Petris G, Casini A, Maule G, Franceschini GM, Zanella I, Conti L, Arnoldi F, Burrone OR, Zentilin L, Zacchigna S, Giacca M, Cereseto A (2018) VSV-G-Enveloped Vesicles for Traceless Delivery of CRISPR-Cas9. Mol Ther Nucleic Acids, 12:453-462, doi:10.1016/j.omtn.2018.05.010.
http://www.ncbi.nlm.nih.gov/pubmed/30195783

Lolli G, Raboni S, Pasqualetto E, Benoni R, Campanini B, Ronda L, Mozzarelli A, Bettati S, Battistutta R (2018) Insight into GFPmut2 pH Dependence by Single Crystal Microspectrophotometry and X-ray Crystallography. J Phys Chem B, doi:10.1021/acs.jpcb.8b07260.
http://www.ncbi.nlm.nih.gov/pubmed/30179482

Ferrara D, Pasetto L, Bonetto V, Basso M (2018) Role of Extracellular Vesicles in Amyotrophic Lateral Sclerosis. Front Neurosci, 12:574, doi:10.3389/fnins.2018.00574.
http://www.ncbi.nlm.nih.gov/pubmed/30174585

Coan M, Rampioni Vinciguerra GL, Cesaratto L, Gardenal E, Bianchet R, Dassi E, Vecchione A, Baldassarre G, Spizzo R, Nicoloso MS (2018) Exploring the Role of Fallopian Ciliated Cells in the Pathogenesis of High-Grade Serous Ovarian Cancer. Int J Mol Sci, 19(9), doi:10.3390/ijms19092512.
http://www.ncbi.nlm.nih.gov/pubmed/30149579

Vagner T, Spinelli C, Minciacchi VR, Balaj L, Zandian M, Conley A, Zijlstra A, Freeman MR, Demichelis F, De S, Posadas EM, Tanaka H, Di Vizio D (2018) Large extracellular vesicles carry most of the tumour DNA circulating in prostate cancer patient plasma. J Extracell Vesicles, 7(1):1505403, doi:10.1080/20013078.2018.1505403.
http://www.ncbi.nlm.nih.gov/pubmed/30108686

Bosco B, Defant A, Messina A, Incitti T, Sighel D, Bozza A, Ciribilli Y, Inga A, Casarosa S, Mancini I (2018) Synthesis of 2,6-Diamino-Substituted Purine Derivatives and Evaluation of Cell Cycle Arrest in Breast and Colorectal Cancer Cells. Molecules, 23(8), doi:10.3390/molecules23081996.
http://www.ncbi.nlm.nih.gov/pubmed/30103421

Lauria F, Tebaldi T, Bernabò P, Groen EJN, Gillingwater TH, Viero G (2018) riboWaltz: Optimization of ribosome P-site positioning in ribosome profiling data. PLoS Comput. Biol., 14(8):e1006169, doi:10.1371/journal.pcbi.1006169.
http://www.ncbi.nlm.nih.gov/pubmed/30102689

Piragyte I, Clapes T, Polyzou A, Klein Geltink RI, Lefkopoulos S, Yin N, Cauchy P, Curtis JD, Klaeylé L, Langa X, Beckmann CCA, Wlodarski MW, Müller P, Van Essen D, Rambold A, Kapp FG, Mione M, Buescher JM, Pearce EL, Polyzos A, Trompouki E (2018) A metabolic interplay coordinated by HLX regulates myeloid differentiation and AML through partly overlapping pathways. Nat Commun, 9(1):3090, doi:10.1038/s41467-018-05311-4.
http://www.ncbi.nlm.nih.gov/pubmed/30082823

Szczurkowska J, Pischedda F, Pinto B, Managò F, Haas CA, Summa M, Bertorelli R, Papaleo F, Schäfer MK, Piccoli G, Cancedda L (2018) NEGR1 and FGFR2 cooperatively regulate cortical development and core behaviours related to autism disorders in mice. Brain, 141(9):2772-2794, doi:10.1093/brain/awy190.
http://www.ncbi.nlm.nih.gov/pubmed/30059965

Malchiodi L, Moro T, Cattina DP, Cucchi A, Ghensi P, Nocini PF (2018) Implant rehabilitation of the edentulous jaws: Does tilting of posterior implants at an angle greater than 45° affect bone resorption and implant success?: A retrospective study. Clin Implant Dent Relat Res, 20(5):867-874, doi:10.1111/cid.12655.
http://www.ncbi.nlm.nih.gov/pubmed/30048036

Alessandrini F, Pezzè L, Menendez D, Resnick MA, Ciribilli Y (2018) ETV7-Mediated DNAJC15 Repression Leads to Doxorubicin Resistance in Breast Cancer Cells. Neoplasia, 20(8):857-870, doi:10.1016/j.neo.2018.06.008.
http://www.ncbi.nlm.nih.gov/pubmed/30025229

Iacovella MG, Bremang M, Basha O, Giacò L, Carotenuto W, Golfieri C, Szakal B, Dal Maschio M, Infantino V, Beznoussenko GV, Joseph CR, Visintin C, Mironov AA, Visintin R, Branzei D, Ferreira-Cerca S, Yeger-Lotem E, De Wulf P (2018) Integrating Rio1 activities discloses its nutrient-activated network in Saccharomyces cerevisiae. Nucleic Acids Res., 46(15):7586-7611, doi:10.1093/nar/gky618.
http://www.ncbi.nlm.nih.gov/pubmed/30011030

Boschian C, Messina A, Bozza A, Castellini ME, Provenzano G, Bozzi Y, Casarosa S (2018) Impaired Neuronal Differentiation of Neural Stem Cells Lacking the Engrailed-2 Gene. Neuroscience, 386:137-149, doi:10.1016/j.neuroscience.2018.06.032.
http://www.ncbi.nlm.nih.gov/pubmed/29964155

Carboni L, Marchetti L, Lauria M, Gass P, Vollmayr B, Redfern A, Jones L, Razzoli M, Malki K, Begni V, Riva MA, Domenici E, Caberlotto L, Mathé AA (2018) Cross-species evidence from human and rat brain transcriptome for growth factor signaling pathway dysregulation in major depression. Neuropsychopharmacology, 43(10):2134-2145, doi:10.1038/s41386-018-0117-6.
http://www.ncbi.nlm.nih.gov/pubmed/29950584

Caricasulo R, Malchiodi L, Ghensi P, Fantozzi G, Cucchi A (2018) The influence of implant-abutment connection to peri-implant bone loss: A systematic review and meta-analysis. Clin Implant Dent Relat Res, 20(4):653-664, doi:10.1111/cid.12620.
http://www.ncbi.nlm.nih.gov/pubmed/29761902

Cristofaro I, Spinello Z, Matera C, Fiore M, Conti L, De Amici M, Dallanoce C, Tata AM (2018) Activation of M2 muscarinic acetylcholine receptors by a hybrid agonist enhances cytotoxic effects in GB7 glioblastoma cancer stem cells. Neurochem. Int., 118:52-60, doi:10.1016/j.neuint.2018.04.010.
http://www.ncbi.nlm.nih.gov/pubmed/29702145

Perez-Romero CA, Lalonde M, Chartrand P, Cusanelli E (2018) Induction and relocalization of telomeric repeat-containing RNAs during diauxic shift in budding yeast. Curr. Genet., 64(5):1117-1127, doi:10.1007/s00294-018-0829-5.
http://www.ncbi.nlm.nih.gov/pubmed/29569051

Kundel F, Tosatto L, Whiten DR, Wirthensohn DC, Horrocks MH, Klenerman D (2018) Shedding light on aberrant interactions - a review of modern tools for studying protein aggregates. FEBS J., 285(19):3604-3630, doi:10.1111/febs.14409.
http://www.ncbi.nlm.nih.gov/pubmed/29453901

Manzano R, Sorarú G, Grunseich C, Fratta P, Zuccaro E, Pennuto M, Rinaldi C (2018) Beyond motor neurons: expanding the clinical spectrum in Kennedy's disease. J. Neurol. Neurosurg. Psychiatry, 89(8):808-812, doi:10.1136/jnnp-2017-316961.
http://www.ncbi.nlm.nih.gov/pubmed/29353237