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Latest publications of CIBIO affiliates (last updated on November 1st, 2018)

Roussigné M, Wei L, Tsingos E, Kuchling F, Alkobtawi M, Tsalavouta M, Wittbrodt J, Carl M, Blader P, Wilson SW. (2018) Left/right asymmetric collective migration of parapineal cells is mediated by focal FGF signaling activity in leading cells. Proc Natl Acad Sci U S A, 115(42):E9812-E9821, doi: 10.1073/pnas.1812016115.
https://www.ncbi.nlm.nih.gov/pubmed/30282743

Pollini D, Loffredo R, Cardano M, Conti L, Lattante S, Notarangelo A, Sabatelli M, Provenzani A (2018) Generation and characterization of a human iPSC line from an ALS patient carrying the Q66K-MATR3 mutation. Stem Cell Res, 33:146-150, doi:10.1016/j.scr.2018.10.011.
http://www.ncbi.nlm.nih.gov/pubmed/30366341

Ghensi P, Cucchi A, Bonaccorso A, Ferroni L, Gardin C, Mortellaro C, Zavan B (2018) In Vitro Effect of Bromelain on the Regenerative Properties of Mesenchymal Stem Cells. J Craniofac Surg, doi:10.1097/SCS.0000000000004862.
http://www.ncbi.nlm.nih.gov/pubmed/30358745

Clamer M, Tebaldi T, Lauria F, Bernabò P, Gómez-Biagi RF, Marchioretto M, Kandala DT, Minati L, Perenthaler E, Gubert D, Pasquardini L, Guella G, Groen EJN, Gillingwater TH, Quattrone A, Viero G (2018) Active Ribosome Profiling with RiboLace. Cell Rep, 25(4):1097-1108.e5, doi:10.1016/j.celrep.2018.09.084.
http://www.ncbi.nlm.nih.gov/pubmed/30355487

Gasperini L, Rossi A, Cornella N, Peroni D, Zuccotti P, Potrich V, Quattrone A, Macchi P (2018) The hnRNP raly regulates PRMT1 expression and interacts with the ALS-linked protein FUS: implication for reciprocal cellular localization. Mol. Biol. Cell, doi:10.1091/mbc.E18-02-0108.
http://www.ncbi.nlm.nih.gov/pubmed/30354839

O'Sullivan A, Salcedo J, Rubert J (2018) Correction to: Advanced analytical strategies for measuring free bioactive milk sugars: from composition and concentrations to human metabolic response. Anal Bioanal Chem, doi:10.1007/s00216-018-1389-8.
http://www.ncbi.nlm.nih.gov/pubmed/30353219

Mezzavilla M, Notarangelo M, Concas MP, Catamo E, Gasparini P, Grillotti MG, Robino A (2018) Investigation of the link between PROP taste perception and vegetables consumption using FAOSTAT data. Int J Food Sci Nutr, doi:10.1080/09637486.2018.1519527.
http://www.ncbi.nlm.nih.gov/pubmed/30304964

Pacchioni F, Esposito A, Giacobazzi E, Bettua C, Struffi P, Jousson O (2018) Air and waterborne microbiome of a pharmaceutical plant provide insights on spatiotemporal variations and community resilience after disturbance. BMC Microbiol., 18(1):124, doi:10.1186/s12866-018-1267-8.
http://www.ncbi.nlm.nih.gov/pubmed/30285625

Le Gall G, Guttula K, Kellingray L, Tett AJ, Ten Hoopen R, Kemsley KE, Savva GM, Ibrahim A, Narbad A (2018) Metabolite quantification of faecal extracts from colorectal cancer patients and healthy controls. Oncotarget, 9(70):33278-33289, doi:10.18632/oncotarget.26022.
http://www.ncbi.nlm.nih.gov/pubmed/30279959

Firrito C, Bertelli C, Vanzo T, Chande A, Pizzato M (2018) SERINC5 as a New Restriction Factor for Human Immunodeficiency Virus and Murine Leukemia Virus. Annu Rev Virol, 5(1):323-340, doi:10.1146/annurev-virology-092917-043308.
http://www.ncbi.nlm.nih.gov/pubmed/30265629

Nava Rodrigues D, Casiraghi N, Romanel A, Crespo M, Miranda S, Rescigno P, Figueiredo I, Riisnaes R, Carreira S, Sumanasuriya S, Gasperini P, Sharp A, Mateo J, Mackay A, McNair C, Schiewer MJ, Knudsen KE, Boysen G, Demichelis F, de Bono JS (2018) RB1 Heterogeneity in Advanced Metastatic Castration Resistant Prostate Cancer. Clin. Cancer Res., doi:10.1158/1078-0432.CCR-18-2068.
http://www.ncbi.nlm.nih.gov/pubmed/30257982

Poli V, Fagnocchi L, Fasciani A, Cherubini A, Mazzoleni S, Ferrillo S, Miluzio A, Gaudioso G, Vaira V, Turdo A, Gaggianesi M, Chinnici A, Lipari E, Bicciato S, Bosari S, Todaro M, Zippo A (2018) Author Correction: MYC-driven epigenetic reprogramming favors the onset of tumorigenesis by inducing a stem cell-like state. Nat Commun, 9(1):3921, doi:10.1038/s41467-018-06480-y.
http://www.ncbi.nlm.nih.gov/pubmed/30237396

Beltran H, Oromendia C, Danila DC, Montgomery B, Hoimes C, Szmulewitz RZ, Vaishampayan U, Armstrong AJ, Stein M, Pinski J, Mosquera JM, Sailer V, Bareja R, Romanel A, Gumpeni N, Sboner A, Dardenne E, Puca L, Prandi D, Rubin MA, Scher HI, Rickman DS, Demichelis F, Nanus DM, Ballman KV, Tagawa ST (2018) A phase II trial of the aurora kinase A inhibitor alisertib for patients with castration resistant and neuroendocrine prostate cancer: efficacy and biomarkers. Clin. Cancer Res., doi:10.1158/1078-0432.CCR-18-1912.
http://www.ncbi.nlm.nih.gov/pubmed/30232224

Vasile F, Della Volpe S, Ambrosio FA, Costa G, Unver MY, Zucal C, Rossi D, Martino E, Provenzani A, Hirsch AKH, Alcaro S, Potenza D, Collina S (2018) Exploration of ligand binding modes towards the identification of compounds targeting HuR: a combined STD-NMR and Molecular Modelling approach. Sci Rep, 8(1):13780, doi:10.1038/s41598-018-32084-z.
http://www.ncbi.nlm.nih.gov/pubmed/30214075

Ciacci N, D'Andrea MM, Marmo P, Demattè E, Amisano F, Di Pilato V, Fraziano M, Lupetti P, Rossolini GM, Thaller MC (2018) Characterization of vB_Kpn_F48, a Newly Discovered Lytic Bacteriophage for Klebsiella pneumoniae of Sequence Type 101. Viruses, 10(9), doi:10.3390/v10090482.
http://www.ncbi.nlm.nih.gov/pubmed/30205588

Zielonka M, Breuer M, Okun JG, Carl M, Hoffmann GF, Kölker S (2018) Pharmacologic rescue of hyperammonemia-induced toxicity in zebrafish by inhibition of ornithine aminotransferase. PLoS ONE, 13(9):e0203707, doi:10.1371/journal.pone.0203707.
http://www.ncbi.nlm.nih.gov/pubmed/30199544

Montagna C, Petris G, Casini A, Maule G, Franceschini GM, Zanella I, Conti L, Arnoldi F, Burrone OR, Zentilin L, Zacchigna S, Giacca M, Cereseto A (2018) VSV-G-Enveloped Vesicles for Traceless Delivery of CRISPR-Cas9. Mol Ther Nucleic Acids, 12:453-462, doi:10.1016/j.omtn.2018.05.010.
http://www.ncbi.nlm.nih.gov/pubmed/30195783

Lolli G, Raboni S, Pasqualetto E, Benoni R, Campanini B, Ronda L, Mozzarelli A, Bettati S, Battistutta R (2018) Insight into GFPmut2 pH Dependence by Single Crystal Microspectrophotometry and X-ray Crystallography. J Phys Chem B, doi:10.1021/acs.jpcb.8b07260.
http://www.ncbi.nlm.nih.gov/pubmed/30179482

Ferrara D, Pasetto L, Bonetto V, Basso M (2018) Role of Extracellular Vesicles in Amyotrophic Lateral Sclerosis. Front Neurosci, 12:574, doi:10.3389/fnins.2018.00574.
http://www.ncbi.nlm.nih.gov/pubmed/30174585

Coan M, Rampioni Vinciguerra GL, Cesaratto L, Gardenal E, Bianchet R, Dassi E, Vecchione A, Baldassarre G, Spizzo R, Nicoloso MS (2018) Exploring the Role of Fallopian Ciliated Cells in the Pathogenesis of High-Grade Serous Ovarian Cancer. Int J Mol Sci, 19(9), doi:10.3390/ijms19092512.
http://www.ncbi.nlm.nih.gov/pubmed/30149579

Vagner T, Spinelli C, Minciacchi VR, Balaj L, Zandian M, Conley A, Zijlstra A, Freeman MR, Demichelis F, De S, Posadas EM, Tanaka H, Di Vizio D (2018) Large extracellular vesicles carry most of the tumour DNA circulating in prostate cancer patient plasma. J Extracell Vesicles, 7(1):1505403, doi:10.1080/20013078.2018.1505403.
http://www.ncbi.nlm.nih.gov/pubmed/30108686

Bosco B, Defant A, Messina A, Incitti T, Sighel D, Bozza A, Ciribilli Y, Inga A, Casarosa S, Mancini I (2018) Synthesis of 2,6-Diamino-Substituted Purine Derivatives and Evaluation of Cell Cycle Arrest in Breast and Colorectal Cancer Cells. Molecules, 23(8), doi:10.3390/molecules23081996.
http://www.ncbi.nlm.nih.gov/pubmed/30103421

Lauria F, Tebaldi T, Bernabò P, Groen EJN, Gillingwater TH, Viero G (2018) riboWaltz: Optimization of ribosome P-site positioning in ribosome profiling data. PLoS Comput. Biol., 14(8):e1006169, doi:10.1371/journal.pcbi.1006169.
http://www.ncbi.nlm.nih.gov/pubmed/30102689

Piragyte I, Clapes T, Polyzou A, Klein Geltink RI, Lefkopoulos S, Yin N, Cauchy P, Curtis JD, Klaeylé L, Langa X, Beckmann CCA, Wlodarski MW, Müller P, Van Essen D, Rambold A, Kapp FG, Mione M, Buescher JM, Pearce EL, Polyzos A, Trompouki E (2018) A metabolic interplay coordinated by HLX regulates myeloid differentiation and AML through partly overlapping pathways. Nat Commun, 9(1):3090, doi:10.1038/s41467-018-05311-4.
http://www.ncbi.nlm.nih.gov/pubmed/30082823

Szczurkowska J, Pischedda F, Pinto B, Managò F, Haas CA, Summa M, Bertorelli R, Papaleo F, Schäfer MK, Piccoli G, Cancedda L (2018) NEGR1 and FGFR2 cooperatively regulate cortical development and core behaviours related to autism disorders in mice. Brain, 141(9):2772-2794, doi:10.1093/brain/awy190.
http://www.ncbi.nlm.nih.gov/pubmed/30059965

Malchiodi L, Moro T, Cattina DP, Cucchi A, Ghensi P, Nocini PF (2018) Implant rehabilitation of the edentulous jaws: Does tilting of posterior implants at an angle greater than 45° affect bone resorption and implant success?: A retrospective study. Clin Implant Dent Relat Res, 20(5):867-874, doi:10.1111/cid.12655.
http://www.ncbi.nlm.nih.gov/pubmed/30048036

Tebaldi T, Zuccotti P, Peroni D, Köhn M, Gasperini L, Potrich V, Bonazza V, Dudnakova T, Rossi A, Sanguinetti G, Conti L, Macchi P, D'Agostino V, Viero G, Tollervey D, Hüttelmaier S, Quattrone A (2018) HuD Is a Neural Translation Enhancer Acting on mTORC1-Responsive Genes and Counteracted by the Y3 Small Non-coding RNA. Mol. Cell, 71(2):256-270.e10, doi:10.1016/j.molcel.2018.06.032.
http://www.ncbi.nlm.nih.gov/pubmed/30029004

Alessandrini F, Pezzè L, Menendez D, Resnick MA, Ciribilli Y (2018) ETV7-Mediated DNAJC15 Repression Leads to Doxorubicin Resistance in Breast Cancer Cells. Neoplasia, 20(8):857-870, doi:10.1016/j.neo.2018.06.008.
http://www.ncbi.nlm.nih.gov/pubmed/30025229

Iacovella MG, Bremang M, Basha O, Giacò L, Carotenuto W, Golfieri C, Szakal B, Dal Maschio M, Infantino V, Beznoussenko GV, Joseph CR, Visintin C, Mironov AA, Visintin R, Branzei D, Ferreira-Cerca S, Yeger-Lotem E, De Wulf P (2018) Integrating Rio1 activities discloses its nutrient-activated network in Saccharomyces cerevisiae. Nucleic Acids Res., 46(15):7586-7611, doi:10.1093/nar/gky618.
http://www.ncbi.nlm.nih.gov/pubmed/30011030

Yassour M, Jason E, Hogstrom LJ, Arthur TD, Tripathi S, Siljander H, Selvenius J, Oikarinen S, Hyöty H, Virtanen SM, Ilonen J, Ferretti P, Pasolli E, Tett A, Asnicar F, Segata N, Vlamakis H, Lander ES, Huttenhower C, Knip M, Xavier RJ (2018) Strain-Level Analysis of Mother-to-Child Bacterial Transmission during the First Few Months of Life. Cell Host Microbe, 24(1):146-154.e4, doi:10.1016/j.chom.2018.06.007.
http://www.ncbi.nlm.nih.gov/pubmed/30001517

Ferretti P, Pasolli E, Tett A, Asnicar F, Gorfer V, Fedi S, Armanini F, Truong DT, Manara S, Zolfo M, Beghini F, Bertorelli R, De Sanctis V, Bariletti I, Canto R, Clementi R, Cologna M, Crifò T, Cusumano G, Gottardi S, Innamorati C, Masè C, Postai D, Savoi D, Duranti S, Lugli GA, Mancabelli L, Turroni F, Ferrario C, Milani C, Mangifesta M, Anzalone R, Viappiani A, Yassour M, Vlamakis H, Xavier R, Collado CM, Koren O, Tateo S, Soffiati M, Pedrotti A, Ventura M, Huttenhower C, Bork P, Segata N (2018) Mother-to-Infant Microbial Transmission from Different Body Sites Shapes the Developing Infant Gut Microbiome. Cell Host Microbe, 24(1):133-145.e5, doi:10.1016/j.chom.2018.06.005.
http://www.ncbi.nlm.nih.gov/pubmed/30001516

Dassi E, Ferretti P, Covello G, HTM-CMB-2015, Bertorelli R, Denti MA, De Sanctis V, Tett A, Segata N (2018) The short-term impact of probiotic consumption on the oral cavity microbiome. Sci Rep, 8(1):10476, doi:10.1038/s41598-018-28491-x.
http://www.ncbi.nlm.nih.gov/pubmed/29992994

Boschian C, Messina A, Bozza A, Castellini ME, Provenzano G, Bozzi Y, Casarosa S (2018) Impaired Neuronal Differentiation of Neural Stem Cells Lacking the Engrailed-2 Gene. Neuroscience, 386:137-149, doi:10.1016/j.neuroscience.2018.06.032.
http://www.ncbi.nlm.nih.gov/pubmed/29964155

Carboni L, Marchetti L, Lauria M, Gass P, Vollmayr B, Redfern A, Jones L, Razzoli M, Malki K, Begni V, Riva MA, Domenici E, Caberlotto L, Mathé AA (2018) Cross-species evidence from human and rat brain transcriptome for growth factor signaling pathway dysregulation in major depression. Neuropsychopharmacology, 43(10):2134-2145, doi:10.1038/s41386-018-0117-6.
http://www.ncbi.nlm.nih.gov/pubmed/29950584

Dalle Vedove A, Spiliotopoulos D, D'Agostino VG, Marchand JR, Unzue A, Nevado C, Lolli G, Caflisch A (2018) Structural Analysis of Small-Molecule Binding to the BAZ2A and BAZ2B Bromodomains. ChemMedChem, 13(14):1479-1487, doi:10.1002/cmdc.201800234.
http://www.ncbi.nlm.nih.gov/pubmed/29770599

Caricasulo R, Malchiodi L, Ghensi P, Fantozzi G, Cucchi A (2018) The influence of implant-abutment connection to peri-implant bone loss: A systematic review and meta-analysis. Clin Implant Dent Relat Res, 20(4):653-664, doi:10.1111/cid.12620.
http://www.ncbi.nlm.nih.gov/pubmed/29761902

Ontañon OM, Landi C, Carleo A, Gagliardi A, Bianchi L, González PS, Agostini E, Bini L (2018) What makes A. guillouiae SFC 500-1A able to co-metabolize phenol and Cr(VI)? A proteomic approach. J. Hazard. Mater., 354:215-224, doi:10.1016/j.jhazmat.2018.04.068.
http://www.ncbi.nlm.nih.gov/pubmed/29753190

Cristofaro I, Spinello Z, Matera C, Fiore M, Conti L, De Amici M, Dallanoce C, Tata AM (2018) Activation of M2 muscarinic acetylcholine receptors by a hybrid agonist enhances cytotoxic effects in GB7 glioblastoma cancer stem cells. Neurochem. Int., 118:52-60, doi:10.1016/j.neuint.2018.04.010.
http://www.ncbi.nlm.nih.gov/pubmed/29702145

Sidarovich V, De Mariano M, Aveic S, Pancher M, Adami V, Gatto P, Pizzini S, Pasini L, Croce M, Parodi F, Cimmino F, Avitabile M, Emionite L, Cilli M, Ferrini S, Pagano A, Capasso M, Quattrone A, Tonini GP, Longo L (2018) A High-Content Screening of Anticancer Compounds Suggests the Multiple Tyrosine Kinase Inhibitor Ponatinib for Repurposing in Neuroblastoma Therapy. Mol. Cancer Ther., 17(7):1405-1415, doi:10.1158/1535-7163.MCT-17-0841.
http://www.ncbi.nlm.nih.gov/pubmed/29695637

Fagnocchi L, Poli V, Zippo A (2018) Enhancer reprogramming in tumor progression: a new route towards cancer cell plasticity. Cell. Mol. Life Sci., 75(14):2537-2555, doi:10.1007/s00018-018-2820-1.
http://www.ncbi.nlm.nih.gov/pubmed/29691590

Zasso J, Ahmed M, Cutarelli A, Conti L (2018) Inducible Alpha-Synuclein Expression Affects Human Neural Stem Cells' Behavior. Stem Cells Dev., 27(14):985-994, doi:10.1089/scd.2018.0011.
http://www.ncbi.nlm.nih.gov/pubmed/29669468

Pinazza M, Ghisi M, Minuzzo S, Agnusdei V, Fossati G, Ciminale V, Pezzè L, Ciribilli Y, Pilotto G, Venturoli C, Amadori A, Indraccolo S (2018) Histone deacetylase 6 controls Notch3 trafficking and degradation in T-cell acute lymphoblastic leukemia cells. Oncogene, 37(28):3839-3851, doi:10.1038/s41388-018-0234-z.
http://www.ncbi.nlm.nih.gov/pubmed/29643474

Negro S, Stazi M, Marchioretto M, Tebaldi T, Rodella U, Duregotti E, Gerke V, Quattrone A, Montecucco C, Rigoni M, Viero G (2018) Hydrogen peroxide is a neuronal alarmin that triggers specific RNAs, local translation of Annexin A2, and cytoskeletal remodeling in Schwann cells. RNA, 24(7):915-925, doi:10.1261/rna.064816.117.
http://www.ncbi.nlm.nih.gov/pubmed/29643068

Perez-Romero CA, Lalonde M, Chartrand P, Cusanelli E (2018) Induction and relocalization of telomeric repeat-containing RNAs during diauxic shift in budding yeast. Curr. Genet., 64(5):1117-1127, doi:10.1007/s00294-018-0829-5.
http://www.ncbi.nlm.nih.gov/pubmed/29569051

Kundel F, Tosatto L, Whiten DR, Wirthensohn DC, Horrocks MH, Klenerman D (2018) Shedding light on aberrant interactions - a review of modern tools for studying protein aggregates. FEBS J., 285(19):3604-3630, doi:10.1111/febs.14409.
http://www.ncbi.nlm.nih.gov/pubmed/29453901

Manzano R, Sorarú G, Grunseich C, Fratta P, Zuccaro E, Pennuto M, Rinaldi C (2018) Beyond motor neurons: expanding the clinical spectrum in Kennedy's disease. J. Neurol. Neurosurg. Psychiatry, 89(8):808-812, doi:10.1136/jnnp-2017-316961.
http://www.ncbi.nlm.nih.gov/pubmed/29353237